Aim of the project

Co-evolutionary predictions of possible protein-protein interactions in plants.

Input datasets

To build high-quality orthogroups we used 51 genomes downloaded mainly from Phytozome DB :

Actinidia chinensis, Aquilegia coerulea, Arabidopsis halleri, Arachis ipaensis, Arabidopsis lyrata, Arabidopsis thaliana, Amborella trichopoda, Brachypodium distachyon, Brassica oleracea, Brassica rapa, Boechera stricta, Beta vulgaris, Capsicum annuum, Coffea canephora, Citrus clementina, Capsella grandiflora, Castanea mollisima, Carica papaya, Capsella rubella, Cucumis sativus, Citrus sinensis, Coccomyxa subellipsoidea, Eutrema salsugineum, Fragaria vesca, Gossypium raimondii, Linum usitatissimum, Musa acuminata, Malus domestica, Mimulus guttatus, Medicago truncatula, Ostreococcus lucimarinus, Oryza sativa, Picea abies, Phoenix dactylifera, Physcomitrela patens, Prunus persica, Pinus tadea, Populus trichocarpa, Phaseolus vulgaris, Ricinum communis, Sorghum bicolor, Setaria italica, Solanum lycopersicum, Selaginella moellendorffii, Spirodela polyrhiza, Solanum tuberosum, Theobroma cacao, Thellungiella parvula, Volvox carteri, Vitis vinifera, Zea mays

The number of input plant genomes for co-evolutionary analysis was reduced to 27 to avoid clade-specific biases and to emphasize focus on seed plants:

Actinidia chinensis , Amborella trichopoda , Aquilegia coerulea , Arabidopsis thaliana , Beta vulgaris , Brassica rapa , Capsella rubella , Capsicum annuum , Carica papaya , Coffea canephora , Cucumis sativus , Erythranthe guttata (Mimulus guttatus) , Eutrema salsugineum , Fragaria vesca , Linum usitatissimum , Malus domestica , Medicago truncatula , Musa acuminata , Oryza sativa , Phaseolus vulgaris , Phoenix dactylifera , Picea abies , Pinus tadea , Solanum lycopersicum , Spirodela polyrhiza , Vitis vinifera , Zea mays